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A-GRIN Genomic Data Report

Animal Genomic Data Report
Number of uploads: 105
Number of animals: 4244
Number of distinct animals: 4043

Known SNP Chips:
SNP Chip Name Number of uploads
Affymetrix Axiom Chicken Array1
Custom Oyster Chip - John Buchanan The Center for Aquaculture Technologies1
GeneSeek Genomic Profiler (GCP) indicus1
GeneSeek Genomic Profiler (GGP) Equine14
GeneSeek-Neogen Porcine SNP80 BeadChip6
GGP Bovine 100K6
GGP Bovine HD150K Beadchip11
GGP Ovine 50K4
GGP Ovine 50K (Embrapa)1
GGP Ovine 50K V21
GGP Porcine 50K BeadChip2
IGGC Caprine SNP50 BeadChip v16
Illumina Bovine SNP50v1 BeadChip1
Illumina Bovine SNP50v2 BeadChip9
Illumina BovineHD BeadChip24
Illumina Infinium Ovine SNP50 v1 BeadChip10
Illumina Ovine HD BeadChip6
Illumina Porcine SNP60 v2 BeadChip1

Animals by SNP Chip (click chip name to download data):
SNP Chip Name Number of Animals
Affymetrix Axiom Chicken Array277
Custom Oyster Chip - John Buchanan The Center for Aquaculture Technologies192
GeneSeek Genomic Profiler (GCP) indicus76
GeneSeek Genomic Profiler (GGP) Equine285
GeneSeek-Neogen Porcine SNP80 BeadChip547
GGP Bovine 100K298
GGP Bovine HD150K Beadchip68
GGP Ovine 50K7
GGP Ovine 50K (Embrapa)16
GGP Ovine 50K V277
GGP Porcine 50K BeadChip48
IGGC Caprine SNP50 BeadChip v1110
Illumina Bovine SNP50v1 BeadChip828
Illumina Bovine SNP50v2 BeadChip100
Illumina BovineHD BeadChip981
Illumina Infinium Ovine SNP50 v1 BeadChip157
Illumina Ovine HD BeadChip167
Illumina Porcine SNP60 v2 BeadChip10

Animals by Taxonomy (click taxonomy name to download data):
Taxonomy Number of Animals
Bovidae Bos indicus - beef Beefmaster20
Bovidae Bos indicus - beef Braford9
Bovidae Bos indicus - beef Brahman62
Bovidae Bos indicus - beef Brahman Miniature Brahman6
Bovidae Bos indicus - beef Brangus875
Bovidae Bos indicus - beef Nellore76
Bovidae Bos indicus - beef Nelore12
Bovidae Bos indicus - beef Santa Gertrudis5
Bovidae Bos indicus - beef Simbrah4
Bovidae Bos indicus - beef Tuli12
Bovidae Bos indicus - dairy Dairy Gir1
Bovidae Bos taurus - beef Angus133
Bovidae Bos taurus - beef Angus Wye35
Bovidae Bos taurus - beef Caracu2
Bovidae Bos taurus - beef Charolais48
Bovidae Bos taurus - beef Chianina17
Bovidae Bos taurus - beef Criollo Raramuri Jornada Experimental Range4
Bovidae Bos taurus - beef Crioulo Lageano24
Bovidae Bos taurus - beef Curraleiro-Pé Duro75
Bovidae Bos taurus - beef Devon5
Bovidae Bos taurus - beef Florida Cracker/Pineywoods20
Bovidae Bos taurus - beef Hereford146
Bovidae Bos taurus - beef Hereford Brae Arden1
Bovidae Bos taurus - beef Hereford Fort Robinson/MARC WWL3
Bovidae Bos taurus - beef Hereford MARC CTL1
Bovidae Bos taurus - beef Junqueira4
Bovidae Bos taurus - beef Limousin69
Bovidae Bos taurus - beef Mocho Nacional15
Bovidae Bos taurus - beef Pantaneiro45
Bovidae Bos taurus - beef Patuá1
Bovidae Bos taurus - beef Piedmontese6
Bovidae Bos taurus - beef Red Angus5
Bovidae Bos taurus - beef Romosinuano20
Bovidae Bos taurus - beef Salers33
Bovidae Bos taurus - beef Senepol24
Bovidae Bos taurus - beef Shorthorn20
Bovidae Bos taurus - beef Simmental87
Bovidae Bos taurus - beef Simmental1
Bovidae Bos taurus - beef South Devon3
Bovidae Bos taurus - beef Tarentaise20
Bovidae Bos taurus - beef Texas Longhorn4
Bovidae Bos taurus - beef Wagyu55
Bovidae Bos taurus - beef Wagyu Akaushi1
Bovidae Bos taurus - dairy Ayrshire74
Bovidae Bos taurus - dairy Brown Swiss50
Bovidae Bos taurus - dairy Guernsey53
Bovidae Bos taurus - dairy Holstein93
Bovidae Bos taurus - dairy Jersey Jersey Island49
Bovidae Bos taurus - dairy Milking Devon9
Bovidae Bos taurus - dairy Milking Shorthorn14
Bovidae Capra hircus Angora25
Bovidae Capra hircus Azul4
Bovidae Capra hircus Boer13
Bovidae Capra hircus Canindé4
Bovidae Capra hircus LaMancha12
Bovidae Capra hircus Marota14
Bovidae Capra hircus Moxotó16
Bovidae Capra hircus Spanish22
Bovidae Ovis aries Barbados Blackbelly7
Bovidae Ovis aries Barriga Negra22
Bovidae Ovis aries Bergamasca24
Bovidae Ovis aries Columbia16
Bovidae Ovis aries Corriedale24
Bovidae Ovis aries Dorper1
Bovidae Ovis aries Hampshire7
Bovidae Ovis aries Hampshire18
Bovidae Ovis aries Ile de France11
Bovidae Ovis aries Leicester Longwool9
Bovidae Ovis aries Lincoln13
Bovidae Ovis aries Morada Nova16
Bovidae Ovis aries Pantaneiro7
Bovidae Ovis aries Rabo Largo27
Bovidae Ovis aries Rambouillet105
Bovidae Ovis aries Somalis Brasileira28
Bovidae Ovis aries St. Croix8
Bovidae Ovis aries Suffolk8
Bovidae Ovis aries Suffolk70
Bovidae Ovis aries Texel3
Equidae Equus caballus Arabe22
Equidae Equus caballus Baixadeiro19
Equidae Equus caballus Campeiro21
Equidae Equus caballus Crioulo9
Equidae Equus caballus Lavradeiro20
Equidae Equus caballus Mangalarga Marchador21
Equidae Equus caballus Marajoara19
Equidae Equus caballus Pantaneiro115
Equidae Equus caballus Puruca19
Equidae Equus caballus Thoroughbred20
Ostreidae Crassostrea virginica192
Phasianidae Gallus gallus Andalusian Blue29
Phasianidae Gallus gallus Aseel Black Breasted Red10
Phasianidae Gallus gallus Aseel Dark7
Phasianidae Gallus gallus Aseel Wheaten10
Phasianidae Gallus gallus Buckeye30
Phasianidae Gallus gallus Buttercup24
Phasianidae Gallus gallus Crevecoeur28
Phasianidae Gallus gallus Jersey Giant Black24
Phasianidae Gallus gallus New Hampshire24
Phasianidae Gallus gallus New Hampshire WI New Hampshire6
Phasianidae Gallus gallus Phoenix10
Phasianidae Gallus gallus Phoenix Golden10
Phasianidae Gallus gallus Phoenix Silver Duckwing8
Phasianidae Gallus gallus Plymouth Rock White31
Phasianidae Gallus gallus Rhode Island Red26
Suidae Sus scrofa Berkshire46
Suidae Sus scrofa Chester White27
Suidae Sus scrofa Duroc76
Suidae Sus scrofa Fengjing19
Suidae Sus scrofa Gloucester Old Spots4
Suidae Sus scrofa Guam Feral6
Suidae Sus scrofa Guinea Hog4
Suidae Sus scrofa Hampshire44
Suidae Sus scrofa Hawaiian Feral35
Suidae Sus scrofa Hereford22
Suidae Sus scrofa Landrace35
Suidae Sus scrofa Large Black15
Suidae Sus scrofa Mangalitsa3
Suidae Sus scrofa Meishan52
Suidae Sus scrofa Minzhu19
Suidae Sus scrofa Moura10
Suidae Sus scrofa Ossabaw Island5
Suidae Sus scrofa Spotted10
Suidae Sus scrofa Tamworth16
Suidae Sus scrofa Yorkshire120
Suidae Sus scrofa Yorkshire GPK510
Suidae Sus scrofa Yorkshire Newsham Line 127

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